| 岗 位： | 副研究员 |
|---|---|
| 最高学历： | 博士 |
| 研究方向： | 生物信息学与系统生物学。 |
| 联系电话： | 0532-80662717 |
| 电子邮件： | gongyh@qibebt.ac.cn |
| 通讯地址： | 山东省青岛市崂山区松岭路189号 |
2014年获清华大学硕士学位，2024年获中国科学院大学博士学位。2014年7月加入中国科学院青岛生物能源与过程所，现任单细胞中心生物信息研究组副研究员。曾获国家自然科学基金面上项目（2024）、科技部重点研发计划子课题（2021）、国家自然科学基金青年项目（2020）和山东省自然科学基金青年项目（2019）资助。已在Innovation、Plant Commun.、Plant J.、iMeta、PNAS、Small、Anal. Chem.等期刊发表论文10余篇，专利和软件著作权申请5项。目前担任Appl. Environ. Microbiol..、mSystems、mLife、Sci. Data等学术期刊的审稿人。
国家自然科学基金（面上项目32370097、青年项目31900071）、科技部重点研发计划子课题（2021YFA0909703）、山东省自然科学基金（青年项目ZR2019QC012）。
1. Jing, X.#, Gong, Y.#, Diao, Z.#, Ma, Y.#, Meng, Y., Chen, J., Ren, Y., Liang, Y., Li, Y., Sun, W., et al. (2025). Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function by FISH-scRACS-seq. The Innovation 6.
2. Gong, Y.#, Wang, Q.#, Wei, L., Liang, W., Wang, L., Lv, N., Du, X., Zhang, J., Shen, C., Xin, Y., et al. (2024). Genome-wide adenine N6-methylation map reveals epigenomic regulation of lipid accumulation in Nannochloropsis. Plant Communications 5.
3. Zhang, J.#, Ren, L.#, Zhang, L.#, Gong, Y.#, Xu, T., Wang, X., Guo, C., Zhai, L., Yu, X., Li, Y., et al. (2023). Single-cell rapid identification, in situ viability and vitality profiling, and genome-based source-tracking for probiotics products. iMeta 2, e117.
4. Jing, X.#, Gong, Y.#, Pan, H., Meng, Y., Ren, Y., Diao, Z., Mu, R., Xu, T., Zhang, J., Ji, Y., et al. (2022). Single-cell Raman-activated sorting and cultivation (scRACS-Culture) for assessing and mining in situ phosphate-solubilizing microbes from nature. ISME Communications 2, 106.
5. Jing, X.#, Gong, Y.#, Xu, T.#, Davison, P.A., MacGregor-Chatwin, C., Hunter, C.N., Xu, L., Meng, Y., Ji, Y., Ma, B., et al. (2022). Revealing CO2-fixing SAR11 bacteria in the ocean by Raman-based single-cell metabolic profiling and genomics. BioDesign Research 2022, 9782712.
6. Chen, G.E., Hitchcock, A., Mareš, J., Gong, Y., Tichý, M., Pilný, J., Kovářová, L., Zdvihalová, B., Xu, J., Hunter, C.N., et al. (2021). Evolution of Ycf54-independent chlorophyll biosynthesis in cyanobacteria. Proceedings of the National Academy of Sciences 118, e2024633118.
7. Jing, X.#, Gong, Y.#, Xu, T.#, Meng, Y., Han, X., Su, X., Wang, J., Ji, Y., Li, Y., Jia, Z., et al. (2021). One-cell metabolic phenotyping and sequencing of soil microbiome by Raman-activated gravity-driven encapsulation (RAGE). mSystems 6, 10.1128/msystems.00181-00121.
8. Gong, Y.#, Kang, N.K.#, Kim, Y.U., Wang, Z., Wei, L., Xin, Y., Shen, C., Wang, Q., You, W., Lim, J.-M., et al. (2020). The NanDeSyn database for Nannochloropsis systems and synthetic biology. The Plant Journal 104, 1736-1745.
9. Xu, T.#, Gong, Y.#, Su, X.#, Zhu, P., Dai, J., Xu, J., and Ma, B. (2020). Phenome–genome profiling of single bacterial cell by Raman-activated gravity-driven encapsulation and sequencing. Small 16, 2001172.
10. Su, X.#, Gong, Y.#, Gou, H., Jing, X., Xu, T., Zheng, X., Chen, R., Li, Y., Ji, Y., Ma, B., et al. (2020). Rational optimization of Raman-activated cell ejection and sequencing for bacteria. Analytical Chemistry 92, 8081-8089.
11. Jing, X.#, Gou, H.#, Gong, Y.#, Su, X., Xu, L., Ji, Y., Song, Y., Thompson, I.P., Xu, J., and Huang, W.E. (2018). Raman-activated cell sorting and metagenomic sequencing revealing carbon-fixing bacteria in the ocean. Environmental Microbiology 20, 2241-2255.
12. Sturme, M.H.J.#, Gong, Y.#, Heinrich, J.M., Klok, A.J., Eggink, G., Wang, D., Xu, J., and Wijffels, R.H. (2018). Transcriptome analysis reveals the genetic foundation for the dynamics of starch and lipid production in Ettlia oleoabundans. Algal Research 33, 142-155.
